gravatar

blahah

Richard Smith-Unna

Recently Published

Aicon instagram exploration
aicon post data exploration examlple
MMETSP dib vs ncgr
TReND NGS 2015 coursework. Transcriptome assembly quality assessment
This was the presentation made by my students at the TReND NGS 2015 bioinformatics course.
Transrate: exploring expression-dependent contig score penalty
Possible expression-weighted contig score penalty schemes for transrate
rice_soap_to_genome_left
rice_soap_to_genome
RNAseq quantification method comparison
living document in which I compare RNAseq quantification methods. Currently: - eXpress - Salmon
Radiations in At-chromosome-1 orthogroups
Simple exploration of Crossref journal list
Transrate contig score initial attempt
Plots exploring the first run of transrate with contig scoring implemented. Run on Trinity-assembled Rice from the SOAPdenovo-trans paper
Arabidopsis chromosome fusion analysis - subtelomere enrichment revision
Transrate assembly and contig plots.
Cyperus assembly transrate
<em>Flaveria</em> C3-C4 gradient analysis
<em>Gynandropsis gynandra</em> genome true gene/GC exploration
Part of a series of analyses looking at quality control of the Gynandropsis gyanandra genome.
Tarenaya - Gynandropsis M/GC LCM RNASeq contamination
log2 fold change explanation
Flaveria bidentis eXpress data exploration
eXpress vs. sailfish
quick comparison of express vs sailfish for RNAseq quantification against flaveria bidentis de-novo transcriptome assembly
Arabidopsis Translatome stats & figures
Summary statistics and figures for the arabidopsis translatome paper.
ublast e-value cutoff exploration
Report 3
de-novo transcriptome assembly development report 2
second-stage progress report for transcriptome assembly optimisation
de-novo transcriptome assembly development report