wvu
Wendy Vu
Recently Published
Publish Plot
remove negative EC
Publish Plot
TN_EC_Map
Nei's GenDist vs Pairwise Pi (r=0.84, pval=2.2e-16)
ALL pops included
Nei's Genetic Distance Heatmap
Genetic distance estimated with 7388 SNPs where at least 95% of genotypes called per position.
E. oleifera Distribution of Inbreeding coefficients (Fis) by country
Boxplot of distribution of heterozygosity by country (1st 96 sequenced genotypes.)
Heterozygosity estimates based on 7388 SNPs (95% call threshold).
minimum read depth per snp = 4
Ignore UP1026, which is part of the Colombian population.
Sol96 LogitReg Pval Distribution
FDR corrected pvalues
Oil Palm Linkage Disequilibrium (Zoomed)
Average R^2 per 100bp windows (980K SNP) Zoomed
Oil Palm Linkage Disequilibrium
Average R^2 per 100bp windows (980K SNP). 1st 96 samples.
