RNA Library Prep for NGS Hands-on Laboratory Training Certificate

RNA Seq analysis training certificate

Analysis of gene and isoform expression in prefrontal cortex (PFC) of rats exposed to nicotine: Star-RSEM-edgeR pipeline

Analysis of gene and isoform expression in prefrontal cortex (PFC) of rats exposed to nicotine: Star-RSEM-EBseq pipeline

Analysis of gene and isoform expression in prefrontal cortex (PFC) of rats exposed to nicotine: Hisat-stringtie-ballgown pipeline

Mapping and analyzing RNA-seq reads with STAR and other tools

Tophat and Cufflinks (Tuxedo tools I ) analysis of S. pombe data from Trinity protocol

Discovering transcript/gene fusion from RNA-seq data using STAR-Fusion from Trinity Cancer Transcriptome Analysis Toolkit (CTAT)

Trinity tools (Part III-B): Analysis of de novo transcript/genes assembly using edgeR

Trinity tools (Part III-A): Analysis of de novo transcript/isoforms assembly using edgeR

Trinity tools (Part II) : De novo transcript assembly analysis using RSEM

Trinity tools (Part I). De novo transcript assembly

Tuxedo tools 2 (Part III) - Differential gene expression analysis using Ballgown

Tuxedo tools 2 (Part II) - Assemble the transcriptome using StringTie

Tuxedo tools 2 (Part I) - Align fastq files using HISAT2

Annotation and analysis of next generation sequencing (NGS) data using BED format

Annotation and analyis of next generation sequencing (NGS) data using gene transfer format (GTF)

Annotation and analyis of next generation sequencing (NGS) data using bcftools

Annotation and analysis of next-generation (NGS) sequencing data using samtools and bamtools

Biopython for manipulation of nucleotide and amino acid sequences

Manipulation of nucleotide and amino acid sequences using python

A catalog of single nucleotide polymorphisms (SNPs) in voltage gated sodium channel subunit genes

Genomic annotation and analysis of human voltage-gated sodium channel subunits

Retrieve, annotate and analyze mouse homologs of human nicotinic acetylcholine receptors subunits using Homolog Database

Annotate and analyze upstream sequences of nicotinic acetylcholine receptor subunit genes

Retrieve information about nicotinic acetylcholine receptor subunits using Organism Database

Annotate and analyze single nucleotide polymorphisms (SNPs) in nicotinic acetylcholine receptor subunits using biomaRt

Annotate and analyze nicotinic acetylcholine receptor subunits using TxDb

Annotate and analyze nicotinic acetylcholine receptor subunits using TxDb and BSgenome

Annotation and analysis of nicotinic acetylcholine receptor subunits using ENSEMBL