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HMSC_cervical_TCGA
EGFR_bivona
SiPSiC_intergration_paper_figures
SiPSiC_intergration_sipsic_genesets
EGFR_patient_cnmf_19_2_24
EGFR_models_cnmf_19_2
EGFR_EMT_pathways
SCC all patients
ACC1 analysis V6
SiPSiC_intergration_all_comparisons
H1975_OCT23_analysis_29_1_24
xeno_bulk_TPM_noMouseReads_29_1
xeno_bulk_TPM_noMouseReads_edgeR
SiPSiC_intergration_harmony
SiPSiC_intergration_seurat
SiPSiC_intergration_sipsic
SiPSiC_intergration_sipsic_CP
xeno_bulk_TPM_noMouseReads
hmsc scc
HCC827_JUN23_analysis_7_1_24
H1975_OCT23_analysis_7_1_2024
EGFR_xeno_bulk_oct23_1JAN24
H1975_OCT23_analysis_2_1_2024
H1975_OCT23_analysis_2_1_2024
H1975_OCT23_analysis_31_12_2023
HMSC_CESC_26_12
HMSC_cc
ACC_PNI_paper_figures
EGFR_xeno_bulk_oct23
EGFR_bulk_H1975_JUN23
EGFR_SiPSic
HCC827_JUN23_analysis
H1975_OCT23_analysis
models_cnmf_analysis_k5-2
patients_cnmf_analysis_V3
bulk_oct23
ACC_PNI__meeting_11_23
ACC_PNI_Analysis_meeting_11_19
ACC PNI 3_10_23
ACC PNI 28_9_23
ACC PNI 27
EGFR 27.9
ACC PNI 19_9_23
models_cnmf_analysis_k9
models_cnmf_analysis_k5
models_cnmf_analysis_5programs
models_cnmf_analysis 5_9_23
EGFR_patient_cnmf_9_8
CD45_analysis_V2_3_8
ACC_CD45_preprocess_2_8
ACC_CD45_cell_type_assignment
CD45_analysis_V2
CD45_analysis_soft_assignment_V1_31_7
EGFR_models_cnmf_30_7
EGFR_patient_cnmf_30_7
C45_analysis 23_7
CD45 23_7
ACC_CD45_analysis_V1
seurat_interg 10_7
lung analysis 3_7_23
xeno analysis 3_7_23
plate_bias_fixing
pre_process V2
with all samples
pre_process
Patients cnmf k=8 15_6
HIF1_tagets_signature 15.6
plate bias 8_6
harmony_all_analysis_29_5
plate_bias_fixing
patients_cnmf_analysis_k=8
patient_scnmf_22_5
harmony EGFR 22_5
All_analysis_15_5
patients_cnmf_analysis_15_5
harmony analysis
harmony analysis
ACC_CD45_preprocess
ACC1 analysis V4 24_4_23
cnmf_programs_in_ACC_V2
HMSC_cNMF
cnmf_programs_in_ACC_normV1
cnmf_programs_in_ACC
xeno_cnmf_analysis__Byinversion
xeno_cnmf_analysis_2Kvargenes_ByExpression
xeno_cnmf_analysis_2Kvargenes_ByExpression_HallmarkInter
xeno_cnmf_analysis_2Kvargenes_3nmfK_byUsage
find_new_clusters_nFeaturesBias
find_new_clusters_20MT
find_new_clusters_V3.1
find_new_clusters_V3
find_new_clusters_V2
microenv_analysis_clean
microenv
patient_cnmf_patient_analysis
cnmf_programs_in_ACC
Myo_lum_score
patients_cnmf_analysis_5Kvargenes